Gehrmann J, Soenarto D, Hidayat K, Beyer M, Quakulinski L, Alkarkoukly S, Berressem S, Gundert A, Butler M, Grönke A, Lennartz S, Persigehl T, Zander T, Beyan O. Seeing the Primary Tumor because of all the Trees: Cancer Type Prediction on low-dimensional Data. Frontiers in Medicine. (2024). 11:1396459. doi:10.3389/fmed.2024.1396459
Waltemath D, Beyan O, Crameri K, Dedié A, Gierend K, Gröber P, Inau ET, Michaelis L, Reinecke I, Sedlmayr M, Thun S, Krefting D. FAIRe Gesundheitsdaten im nationalen und internationalen Datenraum. Bundesgesundheitsbl. (2024). doi: 10.1007/s00103-024-03884-8.
Christoforaki M, Beyan O. Towards an ELSA Curriculum for Data Scientists. AI. (2024). Special Issue Standards and Ethics in AI. 5(2):504-515. doi:10.3390/ai5020025.
Dannenberg, C., Heimann, J., Koumpis, A., Beyan, O. Identification of Medical Ecosystems in the Field of Mental Health and Cardiovascular Diseases at the Cologne Site. International Journal of Online and Biomedical Engineering (iJOE). (2024). 20(05), pp. 66–77. doi: 10.3991/ijoe.v20i05.47247.
Li F, Wang Y, Beyan O, Schöneck M, Lourenco Caldeira L. Voxel-wise Medical Images Generalization for Eliminating Distribution Shift. ACM Transactions on Knowledge Discovery from Data. (2024). Online AM: 25 January 2024. doi:10.1145/3643034
Welten S, Weber S, Holt A, Beyan O, Decker S. Will it run?-A proof of concept for smoke testing decentralized data analytics experiments. Frontiers in Medicine. (2024). Jan 8;10:1305415. doi: 10.3389/fmed.2023.1305415.
Altini N, Rossini M, Turkevi-Nagy S, Pesce F, Pontrelli P, Prencipe B, Berloco F, Seshan S, Gibier JB, Dorado AP, Bueno G, Peruzzi L, Rossi M, Eccher A, Li F, Koumpis A, Beyan O, Barratt J, Vo HQ, Mohan C, Nguyen HV, Cicalese PA, Ernst A, Gesualdo L, Bevilacqua V, Becker JU. Performance and limitations of a supervised deep learning approach for the histopathological Oxford Classification of glomeruli with IgA nephropathy. Computer Methods and Programs in Biomedicine. (2023). Volume 242, 2023, 107814. doi: 10.1016/j.cmpb.2023.107814.
Kirichenko S, Koumpis A, Beyan O. Stakeholders of Cardiovascular Innovation Ecosystems in Germany: A First Level Analysis and an Example. International Journal of Online and Biomedical Engineering (iJOE). (2023). 19(18), pp. 4–17. doi: 10.3991/ijoe.v19i18.45905
Karim MdR, Islam T, Shajalal Md, Beyan O, Lange C, Cochez M, Rebholz-Schuhmann D, Decker S. Explainable AI for Bioinformatics: Methods, Tools and Applications. Briefings in Bioinformatics. (2023). Published in: 21 July 2023. doi: 10.1093/bib/bbad236.
Quakulinski L, Koumpis A, Beyan O. Transparency in Medical Artificial Intelligence Systems. International Journal of Semantic Computing. (2023). Published in: 19 July 2023. doi: 10.1142/S1793351X23630011.
Gehrmann J, Herczog E, Decker S, Beyan O. What prevents us from reusing medical real-world data in research. Sci Data 10, 459. (2023). doi:10.1038/s41597-023-02361-2.
Geng J, Mou Y, Li Q, Li, F, Beyan O, Decker S, Rong C. Improved Gradient Inversion Attacks and Defenses in Federated Learning. IEEE Transactions on Big Data. (2023). doi: 10.1109/TBDATA.2023.3239116.
Welten S, Mou Y, Neumann L, Jaberansary M, Ucer Yediel Y, Kirsten T, Decker S, Beyan O. A Privacy-Preserving Distributed Analytics Platform for Health Care Data. Methods of Information in Medicine. (2022). doi: 10.1055/s-0041-1740564.
Christoforaki M, Beyan O. AI Ethics—A Bird’s Eye View. Applied Science. (2022). 2022, 12, 4130. doi: 10.3390/app12094130
Welten S, Hempel L, Abedi M, Mou Y, Jaberansary M, Neumann L, Weber S, Tahar K, Ucer Yediel Y, Löbe M, Decker S, Beyan O, Kirsten T. Multi-Institutional Breast Cancer Detection Using a Secure On-Boarding Service for Distributed Analytics. Applied Science. (2022). 2022, 12, 4336. doi: 10.3390/app12094336.
Karim MdR, Cochez M, Zappa A, , , , Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing. IEEE/ACM Transactions on Computational Biology and Bioinformatics. (2022). 2022 Jan;19 (1):369-382. doi: 10.1109/tcbb.2020.2994649.
Fluck J, Lindstädt B, Ahrens W, Beyan O, Buchner B, Darms J, Depping R, Dierkes J, Neuhausen H, Müller W, Zeeb H, Golebiewski M, Löffler M, Löbe M, Meineke F, Klammt S, Fröhlich H, Hahn H, Schulze M, Pischon T, Nöthlings U, Sax U, Kusch H, Grabenhenrich L, Schmidt CO, Waltemath D, Semler S, Gehrke J, Kirsten T, Praßer F, Thun S, Wieler L, Pigeot I. 2021. NFDI4Health – Nationale Forschungsdateninfrastruktur für Personenbezogene Gesundheitsdaten. Bausteine Forschungsdatenmanagement. (2021). Nr. 2 (Juli). German:72-85. doi: 10.17192/bfdm.2021.2.8331.
Welten SNeumann LUcer Yediel Yda Silva Santos LOBecker SBeyan O. DAMS: A Distributed Analytics Metadata Schema. Data Intelligence 1–17. (2021). May 12 2021. doi: 10.1162/dint_a_00100.
Hochheiser H, Jing X, Garcia EA, Ayvaz S, Sahay R, Dumontier M, Banda JM, Beyan O, Brochhausen M, Draper E, Habiel S, Hassanzadeh O, Herrero-Zazo M, Hocum B, Horn J, LeBaron B, Malone DC, Nytrø Ø, Reese T, Romagnoli K, Schneider J, Zhang L(Y), Boyce RD. A Minimal Information Model for Potential Drug-Drug Interactions. Front. Pharmacol. (2021). 11:608068. doi: 10.3389/fphar.2020.608068.
Karim MdR, Jiao J, Döhmen T, Cochez M, Beyan O, , . DeepKneeExplainer: Explainable Knee Osteoarthritis Diagnosis from Radiographs and Magnetic Resonance Imaging. IEEE Access, vol. 9, pp. 39757-39780. (2021). doi: 10.1109/ACCESS.2021.3062493.
Gleim LC, Karim MdR, Zimmermann L, Kohlbacher O, Stenzhorn H, Decker S, Beyan O. Enabling Ad-hoc Reuse of Private Data Repositories through Schema Extraction. Journal of Biomedical Semantics. 11, 6 (2020). doi: 10.1186/s13326-020-00223-z.
Bukowski M, Farkas R, Beyan O, Moll L, Hahn H, Kiessling F, Schmitz-Rode T. Implementation of eHealth and AI integrated diagnostics with multidisciplinary digitized data: are we ready from an international perspective? European Radiology (2020). doi: 10.1007/s00330-020-06874-x.
Karim MdR, Beyan O, Zappa A, Costa IG, Rebholz-Schuhmann D, Cochez M, Decker S. Deep Learning-based Clustering Approaches for Bioinformatics. Briefings in Bioinformatics. bbz170. (2020). Published: 02 February 2020. doi: 10.1093/bib/bbz170.
McQuilton P, Batista D, Beyan O, Granell R, Coles S, Izzo M, Lister AL, Pergl R, Rocca-Serra P, Schaap B, Shanahan H, Thurston M, Sansone SA. Helping the consumers and producers of standards, repositories and policies to enable FAIR data. Data Intelligence. 2 (2020), 151–157. doi: 10.1162/dint_a_00037.
Beyan O, Choudhury A, van Soest J, Kohlbacher O, Zimmermann L, Stenzhorn H, Karim MdR, Dumontier M, Decker S, Bonino da Silva Santos LO, Dekker A. Distributed Analytics on Sensitive Medical Data: The Personal Health Train. Data Intelligence. 2 (2020), 96–107. doi: 10.1162/dint_a_00032.
Karim MdR, Rahman MdA, Jares JB, Decker S, Beyan O. A Snapshot Neural Ensemble Method for Cancer Type Prediction Based on Copy Number Variations. Neural Computing and Applications. (2019). First Online: 30 November 2019. doi: 10.1007/s00521-019-04616-9.
Karim MdR, Wicaksono G, Costa IG, Decker S, Beyan O. Prognostically Relevant Subtypes and Survival Prediction for Breast Cancer Based on Multimodal Genomics Data. IEEE Access. Vol. 7, pp. 133850 – 133864 (2019). doi: 10.1109/access.2019.2941796.
Winter A, Stäubert S, Ammon D, Aiche S, Beyan O, Bischoff V, Daumke P. et al. Smart medical information technology for healthcare (SMITH). Methods of Information in Medicine. 57, no. S 01 (2018): e92-e105.
Karim MdR, Cochez M, Beyan OD, Ahmed CF, Decker S. Mining maximal frequent patterns in transactional databases and dynamic data streams: a spark-based approach. Information Sciences. 432 (2018): 278-300.
Porter E, La Gioia A, Salahuddin S, Decker S, Shahzad A, Elahi MA, O’Halloran M, Beyan O. Minimum information for dielectric measurements of biological tissues (MINDER): A framework for repeatable and reusable data. International Journal of RF and Microwave Computer‐Aided Engineering. 28, no. 3 (2018): e21201.
Debruyne C, Beyan OD, Grant R, Collins S, Decker S, Harrower N. A semantic architecture for preserving and interpreting the information contained in Irish historical vital records. International Journal on Digital Libraries. 17, no. 3 (2016): 159-174.
Felzmann H, Beyan T, Ryan M, Beyan O. Implementing an ethical approach to big data analytics in assistive robotics for elderly with dementia. ACM SIGCAS Computers and Society. 45, no. 3 (2016): 280-286.
Beyan OD, Baykal N. A knowledge based search tool for performance measures in health care systems. Journal of Medical Systems. February 2012; 36(1):201-21. Epub 2010 Apr 14.
Koçgil OD, Baykal N. An integrated approach to breast diseases and breast cancer registry and research: BDRS as a web-based multi-institutional model. Computers in Biology and Medicine. November 2007; 37(10):1414-25.
Karaduman OD, Erkmen AM, Baykal N. Integrated Treatment Planning Using an Intelligent Learning for Clinical Decision Support by Reinforcement Feedback. WSEAS Transactions on Computers. July 2006; 5(7), 1541-8.
Saka O, Gülkesen KH, Gülden B, Koçgil OD. Evaluation of two search methods in PubMed; the Regular Search and Search by MeSH Terms. Acta Informatica Medica. Volume 13, No. 4, Pages 180-1832, December 2005.
Maia M, Jaberansary M, Akhtar MH, Ucer Y, Beyan O, Kirsten T. Training Federated Liver Cancer Image Segmentation Models using PHT Infrastructure. 69th Annual Meeting of the German Association of Medical Informatics, Biometry, and Epidemiology e.V. (GMDS), 8-13 September 2024, Dresden, Germany. doi: 10.3205/24gmds225.
Kamal MdM, Kutafina E, Beyan O. Real-Time Process Monitoring Hospital Data. 69th Annual Meeting of the German Association of Medical Informatics, Biometry, and Epidemiology e.V. (GMDS), 8-13 September 2024, Dresden, Germany. doi: 10.3205/24gmds046.
Gehrmann J, Beyan O. Early Multimodal Data Integration for Data-Driven Medical Research – A Scoping Review. Health – Thinking, Researching and Acting Together. Health – Thinking, Researching and Acting Together. 69th Annual Meeting of the German Association of Medical Informatics, Biometry, and Epidemiology e.V. (GMDS), 8-13 September 2024, Dresden, Germany. In: Studies in Health Technology and Informatics. Ebook Volume 317, Pages 49-58. doi:10.3233/SHTI240837.
Elwes MR, Troglio A, Abedi M, Golebiewski M, Meineke F, Kirsten T, Namer B, Beyan O, Kutafina E. Semi-Automatic Export of Electrophysiological Metadata to NFDI4Health Local Data Hubs: Use Case of Microneurography odML-Tables – A Technical Case Report. Health – Thinking, Researching and Acting Together. 69th Annual Meeting of the German Association of Medical Informatics, Biometry, and Epidemiology e.V. (GMDS), 8-13 September 2024, Dresden, Germany. In: Studies in Health Technology and Informatics. Ebook Volume 317, Pages 40-48. doi:10.3233/SHTI240836
Graefe ASL, Rehburg F, Hübner M, Thun S, Beyan O. Review of Key Elements in Developing a Common Data Model for Rare Diseases: Identifying Common Success Factors. Medical Informatics Europe (MIE) 2024, Digital Health and Informatics Innovations for Sustainable Health Care Systems, 25-29 August 2024. Athens, Greece. In: Stud Health Technol Inform. 2024 Aug 22; 316:1396-1400. doi: 10.3233/SHTI240672.
Li F, Kutafina E, Schoneck M, Caldeira LL, Beyan O. How Data Infrastructure Deals with Bias Problems in Medical Imaging. Medical Informatics Europe (MIE) 2024, Digital Health and Informatics Innovations for Sustainable Health Care Systems, 25-29 August 2024. Athens, Greece. In: Stud Health Technol Inform. 2024 Aug 22; 316:726-730. doi: 10.3233/SHTI240517. PMID: 39176898.
Elwes MR, Namer B, Troglio A, Kirsten T, Beyan O, Kutafina E. Harmonizing Microneurography Metadata with Local Data Hubs: A Concept. Medical Informatics Europe (MIE) 2024, Digital Health and Informatics Innovations for Sustainable Health Care Systems, 25-29 August 2024. Athens, Greece. In: Stud Health Technol Inform. 2024 Aug 22; 316:358-359. doi: 10.3233/SHTI240420.
Adnan M, Kutafina E, Beyan O. Cybersecurity Frameworks in Healthcare Data: Short Literature Review. Medical Informatics Europe (MIE) 2024, Digital Health and Informatics Innovations for Sustainable Health Care Systems, 25-29 August 2024. Athens, Greece. In: Stud Health Technol Inform. 2024 Aug 22; 316:301-302. doi: 10.3233/SHTI240403. PMID: 39176732.
Kamal MM, Kutafina E, Beyan O. Real-Time Visualization and Analysis Architecture for Data Integration Processes at Cologne University Hospital’s Medical Data Integration Center. Medical Informatics Europe (MIE) 2024, Digital Health and Informatics Innovations for Sustainable Health Care Systems, 25-29 August 2024. Athens, Greece. In: Stud Health Technol Inform. 2024 Aug 22; 316:48-52. doi: 10.3233/SHTI240341. PMID: 39176670.
Gehrmann J, Beyan O. Data Quality in Medical Real-World Data – An Oncological Use Case. Medical Informatics Europe (MIE) 2024, Digital Health and Informatics Innovations for Sustainable Health Care Systems, 25-29 August 2024. Athens, Greece. In: Stud Health Technol Inform. 2024 Aug 22; 316:9-13. doi: 10.3233/SHTI240332.
Mou Y, Guo F, Lu W, Li Y, Beyan O, Rose T, Dustdar S, Decker S. Towards FAIR Data in Distributed Machine Learning Systems. GLOBECOM 2023. IEEE Global Communications Conference, 4–8 December 2023, Kuala Lumpur, Malaysia.
Maia M, Jaberansary M, Ucer Y, Beyan O, Kirsten T. Incremental Machine Learning using Distributed Data Processing Techniques for Malaria Data Across Multiple Online Sources. 68. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS). 17- 21.09.2023, Heilbronn (Germany).
Mou Y, Li F, Weber S, Haneef S, Meine H, Caldeira L, Jaberansary M, Welten S, Yediel Ucer Y, Prause G, Decker S, Beyan O, KirstenT. Distributed Privacy-Preserving Data Analysis in NFDI4Health With the Personal Health Train. 1st Conference on Research Data Infrastructure (CoRDI) – Connecting Communities. 12-14 September 2023, Karlsruhe (Germany). doi:10.52825/cordi.v1i.282.
Boukhers Z, Bleier A, Ucer Yediel Y, Hienstorfer-Heitmann M, Jaberansary M, Welten S, Koumpis A, Beyan O. PADME-SoSci: A Platform for Analytics and Distributed Machine Learning for the Social Sciences. 2023 ACM/IEEE Joint Conference on Digital Libraries (JCDL), Santa Fe, NM, USA, 26-30 June 2023 pp. 251-252. doi: 10.1109/JCDL57899.2023.00047
Quakulinski L, Koumpis A, Beyan OD. The Library of Babel as a Digital Library of Human Mistakes. 2023 ACM/IEEE Joint Conference on Digital Libraries (JCDL), Santa Fe, NM, USA, 26-30 June 2023. doi: 10.1109/JCDL57899.2023.00062.
Mou Y, Geng J, Zhou F, Beyan O, Rong C, Decker S. pFedV: Mitigating Feature Distribution Skewness via Personalized Federated Learning with Variational Distribution Constraints. Advances in Knowledge Discovery and Data Mining: 27th Pacific-Asia Conference on Knowledge Discovery and Data Mining, PAKDD 2023, Osaka, Japan, May 25–28, 2023. Proceedings, Part II, May 2023, Pages 283–294. doi: 10.1007/978-3-031-33377-4_22.
Li F, Schöneck M, Beyan O, Caldeira LL. Voxel-Wise Medical Imaging Transformation and Adaption Based on CycleGAN and Score-Based Diffusion. Medical Informatics Europe (MIE) 2023, Caring is Sharing – Exploiting Value in Data for Health and Innovation, Gothenburg, Sweden 22-25 May 2023. In: Stud Health Technol Inform. 2023 May 18;302:1027-1028. doi: 10.3233/SHTI230337. PMID: 37203572.
Gehrmann J, Beyan O. Integrating Cross-Departmental Data. Medical Informatics Europe (MIE) 2023, Caring is Sharing – Exploiting Value in Data for Health and Innovation, Gothenburg, Sweden 22-25 May 2023. In: Stud Health Technol Inform. 2023 May 18;302:125-126. doi: 10.3233/SHTI230078. PMID: 37203623.
Alkarkoukly S, Kamal MM, Beyan O. Breaking Barriers for Interoperability: A Reference Implementation of CSV-FHIR Transformation Using Open-Source Tools. Medical Informatics Europe (MIE) 2023, Caring is Sharing – Exploiting Value in Data for Health and Innovation, Gothenburg, Sweden 22-25 May 2023. In: Stud Health Technol Inform, 2023 May 18; 302:43-47. doi: 10.3233/SHTI230061. PMID: 37203606.
Welten SM, Mou Y,Yediel Ucer Y, Beyan OD, Decker SJ, Kirsten T. Function, Aim, and Merit of the Personal Health Train for the Secondary Use of Clinical Data in Research. 1. Heidelberger Frühjahrssymposium Medizinische Informatik. 17 May 2023. Hybridveranstaltung.
Cihan Ş, Özsoy A, Beyan O. Managing Clinical Research on Blockchain. 17th International Congress on Quality in Healthcare, Accreditation and Patient Safety (QPS) & 7th International Congress on Health Informatics and Information Security (HCS). 30 April-03 May 2023, Antalya, Türkiye. Hybrid Congress.
Jaberansary M, Maia M, Ucer Yediel Y, Beyan O, Kirsten T. Analyzing Distributed Medical Data in FAIR Data Spaces. The First International Workshop on Semantics in Dataspaces (SDS 2023) @ The ACM Web Conference 2023. 30 Apr 2023, Austin, Texas, USA. WWW ’23 Companion: Companion Proceedings of the ACM Web Conference 2023, pages 1480–1484. https://doi.org/10.1145/3543873.3587663.
Boukhers Z, Lange C, Beyan O. Enhancing Data Space Semantic Interoperability through Machine Learning: a Visionary Perspective. The First International Workshop on Semantics in Dataspaces (SDS 2023) @ The ACM Web Conference 2023. 30 Apr 2023, Austin, Texas, USA. WWW ’23 Companion: Companion Proceedings of the ACM Web Conference 2023, pages 1462–1467. https://doi.org/10.1145/3543873.3587658.
Jugl M, Welten S, Mou Y, Ucer Yediel Y, Beyan O, Sax U, Kirsten T. Privatsphärenschützende Datenverknüpfung in verteilten Analysen mit dem PHT. SMITH Science Day 2022. Aachen, 23.-23.11.2022. doi: 10.3205/22smith42. Published: January 31, 2023
Castro LJ, Boukhers Z, Giraldo O, Koumpis A, Beyan O, Rebholz-Schuhmann D. NFDI4DataScience registry for reproducible Data Science and Artificial Intelligence. The 3rd Workshop on Open Citations and Open Scholarly Metadata 2022. Online Event.
Quakulinski L, Koumpis A, Beyan O. Establishing Transparency in Artificial Intelligence Systems. 2022 Fourth International Conference on Transdisciplinary AI (TransAI), Laguna Hills, CA, USA, 2022, pp. 116-121. doi: 10.1109/TransAI54797.2022.00027.
Maia M, Jaberansary M, Ucer Y, Beyan O, Kirsten T. Providing Publicly Available Medical Data Access under FAIR Principles for Distributed Analysis. 67. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS), 13. Jahreskongress der Technologie- und Methodenplattform für die vernetzte medizinische Forschung e. V. (TMF). 21.08. – 25.08.2022, online.
Welten SM, Mou Y, Neumann L, Jugl M, Hempel L, Ucer Yediel Y, Beyan O, Kirsten T, Decker SJ. Verteilte Analysen mit dem Personal Health Train: Konzept, Anwendungen und Benutzererfahrung. Science Day 2022, Aachen, Germany, BLE Science Day, 30-06-2022.
Martínez-García A, Cangioli G, Chronaki C, Löbe M, Beyan O, Juehne A, Parra-Calderón CL. FAIRness for FHIR: Towards Making Health Datasets FAIR Using HL7 FHIR. MEDINFO 2021: One World, One Health – Global Paertnership for Digital Innovation, Virtual Conference, October 2-4, 2021. In: Stud Health Technol Inform. 2022 Jun 6;290:22-26. doi: 10.3233/SHTI220024.
Geng J, Mou Y, Li F, Li Q, Beyan O, Decker S, Rong C. Towards General Deep Leakage in Federated Learning. International Workshop on Trustable, Verifiable and Auditable Federated Learning in Conjunction with AAAI 2022 (FL-AAAI-22). March 2, 2022.
Mou Y, Geng J, Welten S, Rong C, Decker S, Beyan O. Optimized Federated Learning on Class-Biased Distributed Data Sources. International Workshops of ECML PKDD 2021 (Virtual Event). September 13-17, 2021. In: Machine Learning and Principles and Practice of Knowledge Discovery in Databases. Proceedings, Part I / edited by Michael Kamp, Irena Koprinska, Adrien Bibal [u.a.] Page(s)/Article-Nr.: 146-158.
Mou Y, Welten S, Jaberansary M, Ucer Yediel Y, Kirsten T, Decker S, Beyan O. Distributed Skin Lesion Analysis Across Decentralised Data Sources. 31st Medical Informatics Europe, Virtual Event, May 29-31, 2021. In: Public Health and Informatics – Proceedings of MIE 2021, Stud Health Technol Inform. 2021 May 27; 281:352-356. doi: 10.3233/SHTI210179. PMID: 34042764. IOS Press 2021, ISBN 978-1-64368-184-9.
Karim MdR, Cochez M, Beyan O, Decker S, Lange C. OncoNetExplainer: Explainable Predictions of Cancer Types Based on Gene Expression Data. The 9th IEEE International Conference on Bioinformatics and Bioengineering (IEEE BIBE 2019). Athens, Greece, October 28-30, 2019.
Fluck J, Pigeot I, Lindstädt B, Gübitz T, Zeeb H, Ahrens W, Löffler M, Brosteanu O, Lang U, Curdt C, Semler SC, Beyan O, Neuhausen H, Dierkes J, Sax U, Kusch H, Senst H, Muth T, Thun S, Kaiser D, Dress J, Müller W, Golebiewski M. NFDI4Health: Ein Konzept für eine föderierte Forschungsdateninfrastruktur personenbezogener Gesundheitsdaten. 64. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie e. V. (GMDS) Deutsche Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie. Dortmund, September 08-11, 2019.
Karim MdR, Cochez M, Jares JB, Uddin M, Beyan O, Decker S. Drug-Drug Interaction Prediction Based on Knowledge Graph Embeddings and Convolutional-LSTM Network. The 10th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (ACM BCB 2019). Niagara Falls, New York, September 7-10, 2019.
Nguyen BP, Reese T, Decker S, Malone DC, Boyce RD, Beyan O. Clinical Decision Support Services to Detect Potential Drug-Drug Interaction using Clinical Quality Language. Medinfo 2019, Health and Wellbeing E-Networks for all. The 17th World Congress of Medical and Health Informatics. Lyon, France August 25-30, 2019. In: Implementation of Clinical Decision Support Services to Detect Potential Drug-Drug Interaction Using Clinical Quality Language. Stud Health Technol Inform. 2019 Aug 21;264:724-728. doi: 10.3233/SHTI190318. PMID: 31438019.
Löbe M, Beyan O, Stäubert S, Meineke F, Ammon D, Winter A, Decker S, Löffler M, Kirsten T. Design of the SMITH Metadata Services. Medinfo 2019, Health and Wellbeing E-Networks for all. The 17th World Congress of Medical and Health Informatics. Lyon, France August 25-30, 2019. In: Design of Metadata Services for Clinical Data Interoperability in Germany. Stud Health Technol Inform. 2019 Aug 21;264:1528-1529. doi:10.3233/SHTI190518. PMID: 31438215.
Mietchen D, Schwaiger V, Beyan O. FAIR Ethics: Making Ethical Review Processes more Machine Actionable. Ethics and Social Aspects of Data, RDA 12th Plenary. Gaborone, Botswana, 7 November 2018.
Karim MdR, Rahman MdA, Decker S, Beyan O. Cancer Risk and Type Prediction Based on Copy Number Variations with LSTM and Deep Belief Networks.Artificial Intelligence International Conference (A2IC2018). Barcelona, Spain, 21-23 November 2018.
Karim MdR, Nguyen BP, Zimmermann L, Kirsten T, Lobe M, Meineke F, Stenzhorn H, Kohlbacher O, Decker S, Beyan O. A Distributed Analytics Platform to Execute FHIR-based Phenotyping Algorithms. 11th International Semantic Web Applications and Tools for Healthcare and Life Sciences (SWAT4HCLS 2018). Antwerp, Belgium, 3-6 December 2018.
Eibl E, Sakik S, Schneider N, Beyan O, Lukas N. Identification of SHACL Constraints from a Knowledge Graph. 11th International Semantic Web Applications and Tools for Healthcare and Life Sciences (SWAT4HCLS 2018). Antwerp, Belgium, 3-6 December 2018.
Beyan O, Wuchner A, Eisengräber-Pabst D, Quix C, Zaschke C, Schumacher O. Research Data in the Fraunhofer Digital Project: Creating a FAIR Research Data Infrastructure and Culture. Workshop on Research Objects (RO 2018). 29 October 2018, Amsterdam, Netherlands.
Gleim LC, Karim MdR, Zimmermann L, Kohlbacher O, Stenzhorn H, Decker S, Beyan O. Schema Extraction for Privacy Preserving Processing of Sensitive Data. 15th European Semantic Web Conference (ESWC 2018), SeWeBMeDA 2018. Heraklion, Crete, Greece, 3-7 June 2018. In: Joint Proceedings of MEPDaW, SeWeBMeDA and SWeTI 2018, Volume 2112, Issue 1, Pages 36-47.
Beyan O, Juehne A, LeMay K, Durst L, Uhlmansiek M, Wolski M, Hudson Vitale C, Morley-Fletcher E, McIntosh. Reproducible Health Data Service Workflows Adoption and Training Guide for Biomedical Service Centers. Göttingen-CODATA RDM Symposium 2018. 18-20 March 2018, Göttingen, Germany.
Könning JW, Velasco CA, Yehya M , Decker S, Beyan O. Representing medication guidelines for use in production rule systems in the context of POLYCARE project.International Academy, Research, and Industry Association -IARIA-: FUTURE COMPUTING 2018, The Tenth International Conference on Future Computational Technologies and Applications. Barcelona, Spain, 18-22 February 2018. IARIA, 2018. ISBN: 978-1-61208-608-8: S.15-23, p. 15-23.
Karim MdR, Heinrichs M, Gleim LC, Cochez M, Porter E, La Gioia A, Salahuddin S, Decker S, O’Halloran M, Beyan OD. Towards a FAIR Sharing of Scientific Experiments: Improving Discoverability and Reusability of Dielectric Measurements of Biological Tissues. 10th International Semantic Web Applications and Tools for Healthcare and Life Sciences (SWAT4HCLS) Conference. Rome, Italy, 4-7 December 2017.
Beyan OD, Handschuh S, Koumpis A, Fragidis G, Decker S. A Framework for Applying Data Integration and Curation Pipelines to Support Integration of Migrants and Refugees in Europe. 17th Working Conference on Virtual Enterprises (PRO-VE). October 2016, Porto, Portugal. IFIP Advances in Information and Communication Technology, AICT-480, pp.588-596, 2016, Collaboration in a Hyperconnected World.
Beyan OD, Decker S. An RDF Based Semantic Approach to Model Temporal Relations in Health Records.9th International Conference Semantic Web Applications and Tools for Life Sciences (SWAT4LS). Amsterdam, Netherland, 5-8 December 2016.
Felzmann H, Beyan T, Ryan M, Beyan O. Implementing an ethical approach to big data analytics in assistive robotics for elderly with dementia. ETHICOMP2015.De Montfort University, Leicester, UK. 7–9 September 2015.
Beyan O, Mealy PJ, Grant D, Grant R, Harrower N, Breathnach C, Collins S, Decker S. Historical Data Preservation and Interpretation Pipeline for Irish Civil Registration Records. On the Move (OTM) Confederated International Conferences “On the Move to Meaningful Internet Systems”. Rhodes, Greece, October 2015. In: Ciuciu I. et al. (eds) On the Move to Meaningful Internet Systems: OTM 2015 Workshops. Lecture Notes in Computer Science, vol 9416. Springer, Cham
Debruyne C, Beyan OD, Grant R, Collins S, Decker S. On a linked data platform for irish historical vital records.International Conference on Theory and Practice of Digital Libraries (TPDL). Poznań, Poland, 14-18 September 2015. In: Kapidakis S., Mazurek C., Werla M. (eds) Research and Advanced Technology for Digital Libraries. TPDL 2015. Lecture Notes in Computer Science, vol 9316. Springer, Cham.
Felzmann H, Murphy K, Casey D, Beyan O. Robot-assisted care for elderly with dementia: is there a potential for genuine end-user empowerment?The Emerging Policy and Ethics of Human Robot Interaction. 2 March 2015, Portland, OR, USA.
Kazemzadeh L, Kamdar MR, Beyan OD, Decker S, Barry F. LinkedPPI: Enabling Intuitive, Integrative Protein-Protein Interaction Discovery. 13th International Semantic Web Conference (ISWC)-4th Workshop on Linked Science 2014— Making Sense Out of Data (LISC2014). Riva del Garda, Italy, 19 October 2014.
Debruyne C, Beyan OD, Decker S, Collins S. Using Semantic Technologies to Create Virtual Families from Historical Vital Records. European Data Infrastructure, 1st European Ontology Network (EUON) Workshop. De Meervaart Conference Centre, Amsterdam, The Netherlands, 25 September 2014.
Beyan OD, Breathnach C, Collins S, Debruyne C, Decker S, Grant D, Grant R, Gurrin B. Towards Linked Vital Registration Data for Reconstituting Families and Creating Longitudinal Health Histories.Vienna Summer of Logic (VSL) 2014, Knowledge Representation for Health Care (KR4HC). Vienna, Austria, July 2014.
Rakhmawati NA, Hasnain A, Beyan O, Iqbal A, Decker S. The Cost And Benefit of Exploiting Links in Federated SPARQL Query. 10th International Conference on Web Information Systems and Technologies (WEBIST 2014). Barcelona, Spain, April 2014.
Beyan OD, Iqbal A, Khan Y, Antoniades A, Keane J, Hasapis P, Georgousopoulos C, Ioannidi M, Decker S, Sahay R. Querying Phenotype-Genotype Associations across Multiple Knowledge Bases using Semantic Web Technologies. 13th IEEE International Conference on BioInformatics and BioEngineering (BIBE). Chania-Greece; November 2013.
Sahay R, Ntalaperas D, Kamateri E, Hasapis P, Beyan OD, Strippoli MPF, Demetriou CA, Gklarou-Stavropoulou T, Brochhausen M, Tarabanis K, Bouras T, Tian D, Aristodimou A, Antoniades A, Georgousopoulos C, Hauswirth M, Decker S. An Ontology for Clinical Trial Data Integration. IEEE International Conference on Systems, Man, and Cybernetics (SMC). Manchester, UK, October 2013.
Beyan OD, Tercan B. Sağlık Bakımında Bilgi Yönetimi (Knowledge Management in Health Care). VIII. Ulusal Tıp Bilişimi Kongresi (TURKMIA’11). Antalya, Türkiye, November 2011.
Beyan T, Beyan OD. Kaliteli Tıbbi Bakım İçin Sağlık Malzemeleri Tedarik Zincirinde Bilişim Teknolojilerine Dayalı Dönüşüm: Genel Bir Çerçeve Önerisi (Transformation of Health Materials Supply Chain Based on Information Technologies For Qualified Healthcare). VIII. Ulusal Tıp Bilişimi Kongresi (TURKMIA’11). Antalya, Türkiye, November 2011.
Beyan OD, Beyan T, Baykal N. Sağlık Bakımı Performans Ölçümü Ontolojisi ve Bilgi Tabanı (An Ontology and Knowledge Base For Healthcare Perfomance Measurements). VII. Ulusal Tıp Bilişimi Kongresi (TURKMIA’10). Northern Cyprus, October 2010.
Koçgil OD, Beyan T, Baykal N. Sağlık Bakımı Performans Ölçümü İçin Bir Karşılaştırma Aracı Önerisi (A Framework Proposal for Health Care Performance Measurement and its Application to National Health Care System). The Ministry of Health of Turkey, the International Congress on Quality and Performance in Healthcare. Antalya, Türkiye, March 2009.
Koçgil OD, Baykal N, Beyan T. Sağlık ve Sağlık Bakım Sistemlerinde Performans İzleme ve Değerlendirme (Performance Measurement and Assessment in Health Care Systems). The Ministry of Health of Turkey, the Second e-Health Congress. Antalya, Türkiye, October 2007.
Beyan T, Baykal N, Koçgil OD. Kompleks Adaptif Sistem Olarak Sağlık Sistemleri ve Performans (Health Systems as Complex Adaptive Systems and Performance). The Ministry of Health of Turkey, the Second e-Health Congress. Antalya, Türkiye, October 2007.
Karaduman OD, Erkmen AM, Baykal N. Intelligent “Health Restoration System”: Reinforcement Learning Feedback to Diagnosis and Treatment Planning. 5th World Scientific and Engineering Academy and Society (WSEAS) International Conference on Telecommunications and Informatics.İstanbul, Türkiye, 27-29 May 2006.
Akman E, Beyan T, Koçgil OD, Mizani M. Yeni Bir Sağlık Standardı: Bakım Kaydının Sürekliliği (A New Health Standard, Continuity of Care Records). II. Ulusal Tıp Bilişimi Kongresi (Medical Informatics ’05). Antalya, Türkiye, November 2005.
Saka O, Gülkesen KH, Gülden B, Koçgil OD. Evaluation of two search methods in PubMed; the Regular Search and Search by MeSH Terms. European Medical Informatics Conference (MIE) 2005. Geneva, Switzerland, 2005. In: Connecting Medical Informatics and Bio-Informatics, European Notes in Medical Informatics (ENMI) 2005, Pages 1293-1298.
Koçgil OD. ODTÜ İnternet Üzerinden Bilişim Yüksek Lisans Programı Deneyimi (Internet Based Distance Education Experience of METU). ÖYP-YUUP Uzaktan Eğitim Çalıştayı. Mersin, Türkiye, 2004.
Koçgil OD, Baykal N, Baykal A. Cancer Informatics (Poster). 10th Biomedical Science and Technology Symposium (BIOMED 2003). Northern Cyprus, October 2003.
Koçgil OD, Baykal N, Baykal A. Integrated breast diseases research and cancer registry in Turkey. American Medical Informatics Association (AMIA) Annual Symposium. 8-12 November 2003, Washington, DC, US. In: AMIA Annual Symposium Proceeding, 2003: 897.
Koçgil OD, Baykal N. Campus Wide Asynchronous Distance Learning: METU Experience. 5th Multi-Conference on Systemics, Cybernetics and Informatics (SCI 2001). Orlando, Florida, US, July 2001. Proceeding Book, Volume 8, Pages 170-4.
et al. Recommendations on FAIR metrics for EOSC. EOSC Executive Board, FAIR Working Group. Luxembourg: Publications Office of the European Union (2021). ISBN 9789276281115.
Recommendations on certifying services required to enable FAIR within EOSC. EOSC Executive Board, FAIR Working Group. Luxembourg: Publications Office of the European Union (2021). ISBN 9789276281122.
Beyan O, Emam İ, Rocca-Serra P, Sansone SA, Juty N, Alharbi E, Wood C, Henderson D, Burdett T, Konopko M. D2.5 FAIRplus FAIR Data Maturity Framework. FAIRplus. EU-H2020 (2021). doi: 10.5281/zenodo.5040591.
Burdett T, Courtot M, Xu F, Gu W, Satagopam V, Juty N, Beyan O, Ronzano F, Furlong L, Emam I, Goble C, Giessmann R, Lynch N. D3.01 First phase exemplar IMI projects FAIRified. FAIRplus. EU-H2020 (2021). doi: 10.5281/zenodo.4322743
Scollen S, Lynch N, Williams-Jones B, Hurst H, Peeters P, Sansone SA, Rocca-Serra P, Delfin A, Cambon-Thomsen A, Emam I, Juty N, Pippow A, Beyan O. D5.5. Sustainability Plan. FAIRplus. EU-H2020 (2020). doi:10.5281/zenodo.4354652
Velasco CA, Mohamad Y, Beyan O. D9.5 Plan For Contributions to Standardisation. PICASO: A Personalised Integrated Care Platform.EU-H2020. 2018.
Beyan O. An Overview of Geotagging.IRL: Irish Record Linkage 1864-1913. Irish Research Council (IRC) Project. 2016.
Beyan T, Felzmann H, Ryan M, Lang N, Beyan O. D1.2 Ethics Framework. MARIO: Managing active and healthy aging with use of caring service robots.EU-H2020. 2015.
Cortis K, Koumpis A, Casey D, Murphy K, Beyan O, Beyan T, Ricciardi F, Sancarlo D, Giuliani F, Raciti M, Reforgiato D, Trochidis I, Mongiovì M, Bleaden A, Ghrissi M, Pegman G. D10.5 Data Management Plan. MARIO: Managing active and healthy aging with use of caring service robots.EU-H2020. 2015.
Jones M, Freitas A, Asooja K, Beyan O, Sahay R. D5.1 SIFEM Conceptual Model. SIFEM: Semantic Infostructure interlinking an open source Finite Element tool and libraries with a model repository for the multi-scale Modelling and 3d visualization of the inner-ear.EU-FP7. 2014.
Beyan OD. Doctor of Philosophy Degree in Medical Informatics. A New Ontology and Knowledge Base System for Performance Measurement in Health Care. Middle East Technical University, Informatics Institute, Department of Health Informatics. 2010.
Beyan OD. Master of Science Degree in Sociology. Questioning Effects Of Patient Empowerment Antecedent By Information And Communication Technologies In Breast Cancer Patients: A Case Study From Turkey. Middle East Technical University, Faculty of Arts and Sciences, Department of Sociology. 2010.
Koçgil OD. Master of Science Degree in Information Systems. Proposal for an Integrated Breast Diseases Research and National Cancer Registry System Design and Implementation. Middle East Technical University, Informatics Institute, Department of Information Systems. 2003.