Teaching

RWTH AACHEN UNIVERSITY

  • Data Driven Medicine (Lecture): 2017 (SS), 2017-2018 (WS), 2018-2019 (WS)
  • Big Data in Medical Informatics (Lecture): 2016-2017 (WS)
  • Knowledge Graphs Praktikum (Practical Course): 2018 (SS), 2019 (SS)
  • Methods for Data Reusability (Seminar): 2018-2019 (WS), 2019-2020 (WS)
  • Big Data in Personalized Medicine (Seminar): 2016 (SS), 2016-2017 (WS), 2017 (SS), 2017-2018 (WS)
  • Research Data Management (Seminar): 2017 (SS)
  • Linked Data (Seminar): 2015-2016 (WS), 2016 (SS), 2016-2017 (WS), 2017 (SS)

ATILIM UNIVERSITY (TURKEY)

  • COMPE 111- Introduction to Computer Engineering: 2011-2012 (1)
  • SE 112- Introduction to Software Engineering: 2011-2012 (2)
  • SE 322- Software Design and Architecture: 2011-2012 (2)
  • COMPE 343- Database Systems and Programming: 2011-2012 (3)
  • COMPE 491- Senior Project: 2011-2012 (1), 2011-2012 (2)

MIDDLE EAST TECHNICAL UNIVERSITY-METU (TURKEY)

  • IS 503- Database Concepts and Applications: 2010-2011 (2)
  • IS 580- Knowledge Representation and Data Mining: 2009-2010 (1), 2010-2011 (1)
  • MIN 502- Introduction to Medical Informatics: 2008-2009 (2), 2009-2010 (2)
  • IS 100- Introduction to Information Technologies and Applications: 2000 through 2003

RUNNING THESES:

FAIR Identifier Registry for Distributed Systems (Supervised by Prof. Dr. Stefan Decker; Advisors: Dr. Oya Deniz Beyan) (Master)

Towards Automating Graph Data Cleansing Using Shapes (Supervised by Prof. Dr. Stefan Decker; Advisors: Dr. Oya Deniz Beyan, Dr. Heiner Oberkampf) (Bachelor)

Classification of Cancer with Methylation Aware Motifs. (Supervised by Prof. Dr. Stefan Decker; Advisors: Dr. Oya Deniz Beyan, Md. Rezaul Karim, M.Sc.) (Bachelor)

An Explainable and Fully Automated Localization and Semantic Segmentation Technique for Biomedical Imaging (Supervised by Prof. Dr. Stefan Decker; Advisors: Dr. Oya Deniz Beyan, Md. Rezaul Karim, M.Sc.) (Master)


FINISHED THESES:

Semantic Anomaly Detection in Medical Time Series (Completed by Sven Festag in 2019; Supervised by Prof. Dr. Stefan Decker, Dr. rer. nat. Cord Spreckelsen; Advisor: Dr. Oya Deniz Beyan) (Master)

Deep Learning-based Knee Osteoarthritis Diagnosis from Radiographs and Magnetic Resonance Images (Completed by Jiao Jiao  in 2019; Supervised by Prof. Dr. Stefan Decker; Advisors: Dr. Oya Deniz Beyan, Dr. Michael Cochez, Md. Rezaul Karim, M.Sc.) (Master)

Developing a machine-actionable process model for ethical approval workflows (Completed by Verena Schwaiger in 2019; Supervised by Prof. Dr. Stefan Decker; Advisor: Dr. Oya Deniz Beyan) (Master)

Unsupervised Anomaly Detection in Medical Time Series Data (Completed by Tobias Brockhoff in 2019; Supervised by Prof. Dr. Stefan Decker; Advisor: Dr. Oya Deniz Beyan) (Master)

Patterns zur Integration regel- und prozessbasierter Modellkomponenten bei der Operationalisierung klinischer Leitlinien. (Completed by  Florian Lammers in 2019; Supervised by Prof. Dr. Stefan Decker, Dr. rer. nat. Cord Spreckelsen; Advisor: Dr. Oya Deniz Beyan) (Master)

Arden Syntax in Use of Data Analysis Pipelines – Development of a DSL Based on the Arden Syntax, supporting recruitment for clinical trails (Completed by Felix Michael Fuchs in 2019; Supervised by Prof. Dr. Stefan Decker, Dr. rer. nat. Cord Spreckelsen; Advisor: Dr. Oya Deniz Beyan) (Bachelor)

Design and Implementation of an adaptable visual query tool for graph based health data (Completed by Maximilian Orth in 2019; Supervised by Prof. Dr. Stefan Decker; Advisor: Dr. Oya Deniz Beyan) (Master)

Implementation of Clinical Decision Support Services to Detect Drug Interactions using Clinical Quality Language (Completed by Binh-Phi Nguyen in 2019; Supervised by Prof. Dr. Stefan Decker; Advisor(s): Dr. Oya Deniz Beyan, Md. Rezaul Karim, M.Sc.) (Master)

Using Deep Neural Networks and Copy Number Variations for Cancer Detection (Completed by Md. Ashiqur Rahman in 2018; Supervised by Prof. Dr. Stefan Decker; Advisors: Dr. Oya Deniz Beyan, Md. Rezaul Karim, M.Sc.) (Master)

Semantic Data Profiling in Data Lake (Completed by Jasim Waheed Ansari in 2018; Supervised by Prof. Dr. Stefan Decker; Advisors: Dr. Oya Deniz Beyan, Naila Karim, Dr. Michael Cochez) (Master)

Analysis of Breast Cancer Genomic Data with Multimodal Deep Belief Network (Completed by Galih Gilang Wicaksono in 2018; Supervised by Prof. Dr. Stefan Decker; Advisors: Dr. Oya Deniz Beyan, Md. Rezaul Karim, M.Sc.) (Master)

Smart Quality Check for FHIR Resources System (Completed by Hareem Mughis in 2017; Supervised by Prof. Dr. Stefan Decker; Advisor: Dr. Oya Deniz Beyan) (Master)

The Design and Implementation of an Integrated Care Plan Application for Chronic Patients with the FHIR Standard (Completed by Maren Grüter in 2017; Supervised by Prof. Dr. Stefan Decker; Advisor: Dr. Oya Deniz Beyan) (Bachelor)

Development and Optimization of a STOPP/START Rule Base to Identify Potential Adverse Drug Reactions in Polypharmacy Cases (Completed by Jonas W. Könning in 2017; Supervised by Prof. Dr. Stefan Decker; Advisor: Dr. Oya Deniz Beyan) (Bachelor)

CONTRIBUTION TO STANDARDIZATION ACTIVITIES:

World Wide Web Consortium (W3C). A Minimum Representation of Potential Drug-Drug Interaction Knowledge and Evidence – Technical and User-centered Foundation. Final Community Group Report

HL7 FHIR. Potential Drug-Drug Interaction (PDDI) CDS IG R1/STU.


PROGRAM COORDINATION:

Sağlık Bilgi Sistemleri (SBS) Sertifika Programı (Healthcare Information Systems Certification Program), Middle East Technical University (METU) (in Turkish)

ION Informatics Online Master Program, Middle East Technical University (METU)


CURRICULUM & COURSE DEVELOPMENT:

Data Driven Medicine, RWHT Aachen University

Sağlık Bilgi Sistemleri (SBS) Sertifika Programı (Healthcare Information Systems Certification Program), Middle East Technical University (METU) (in Turkish)

Introduction to Information Technologies and Applications, Middle East Technical University (METU)